If I remember right, OEM Honda TRX250R cases are injection die cast & it could just be a run went through, with a different type of aluminum than normally used ( some of our jets shot down in war time & scraped ) & this is the results showing it.
All those area where bearings are to be installed, need to be carefully measured to see how much they have expanded. I might could be, they could be PCed on the inside & then the bearing areas cleaned up & bearings pressed in. How thick does the PC coat build up ?.
Theres got to be some way to repair them that wont break the bank.
Neil