The old big bore Wiseco & Wossnor pistons, will have the holes down the middle to attempt to keep the exhaust bridge cool, but the new machined ESR pistons, will have three sets of hole indentions so you can drill out those that you need.
The ESR cylinders, have the big main oval exhaust port & the two aux ports, so you need to drill out the sets of holes on each side of the piston to cool the small piece of bridge in between.
Sounds like you have the old Wiseco/Pro-x piston used on cylinders with bridged main exhaust port.
Everybody that has a Pro-x or ESR cylinders, what ever the bore size, needs to be using the new pistons ESR offeres that the machining on the sides are different to stop the port linking.
Neil